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LDkit: a parallel computing toolkit for linkage ... - Springer
WebCandiHap allows rapid and robust haplotype analysis and candidate identification preselection of candidate causal SNPs and InDels from Sanger or next-generation sequencing data. Investigators can use CandiHap to specify a gene or linkage sites based on GWAS and explore favorable haplotypes of candidate genes for target traits. WebNov 26, 2024 · aov.pheno.test: anova test for phenotype based on haplotype dot-check_same_or_not: check if REF same as hap dot-colnames.mcol: change mcols data colnames dot-detect_file: detect file format for import gff or gff3 file modified based... dot-GENE_TYPES: copy from GenomicFeatures dot-getlist: get name of list dot-unlist.name: … green bay packers first super bowl roster
Candihap: a Toolkit for Haplotype Analysis for Sequence of …
WebDownload and Install CandiHap. Download CandiHap for Linux (Debian, Fedora/Redhat, Ubuntu): CandiHap-1.3.0.zip (Contains: CandiHap.pl, GWAS_LD2haplotypes.pl, … WebDownload CandiHap for Linux (Debian, Fedora/Redhat, Ubuntu): CandiHap-1.3.0.zip (Contains: CandiHap.pl, GWAS_LD2haplotypes.pl, vcf2hmp.pl, snpEff2hmp.pl) Windows and Mac users most likely want one of these versions: Download CandiHap for macOS : CandiHap-1.3.0.dmg Download CandiHap for Windows : CandiHap_win64_V1.3.0.zip … WebFeb 27, 2024 · Based on the standard VCF (variant call format) format, CandiHap is developed to fast preselection candidate causal SNPs and gene(s) from GWAS by … flower shops huntington beach ca